Slide-tags - Human Tonsil

Slide-tags enables single-nucleus barcoding for multimodal spatial genomics

zenodo_spatial_slidetags

Info

zenodo_spatial_slidetags/slidetags/human_tonsil
Russell et al. (2023)
109.57 MiB
23-09-2024
5778 × 17746

Used in

Description

A human tonsil was profiled by Slide-tags.

Preview

dataset is an AnnData object with n_obs × n_vars = 5778 × 17746 with slots:

Reference

Name Description Type Data type Size
obs
cell_type Classification of the cell type based on its characteristics and function within the tissue or organism. vector category 5778
var
feature_id Unique identifier for the feature, usually a ENSEMBL gene id. vector object 17746
feature_name A human-readable name for the feature, usually a gene symbol. vector object 17746
layers
counts Raw counts sparsematrix float32 5778 × 17746
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

Russell, Andrew J. C., Jackson A. Weir, Naeem M. Nadaf, Matthew Shabet, Vipin Kumar, Sandeep Kambhampati, Ruth Raichur, et al. 2023. “Slide-Tags Enables Single-Nucleus Barcoding for Multimodal Spatial Genomics.” Nature 625 (7993): 101–9. https://doi.org/10.1038/s41586-023-06837-4.