MERFISH - Mouse Cortex

Spatially resolved profiling of mouse cerebral cortex using multiplexed error-robust fluorescence in situ hybridization (MERFISH)

zenodo_spatial

Info

zenodo_spatial/merfish/mouse_cortex
Fang et al. (2022)
12.54 MiB
23-09-2024
13221 cells × 234 genes

Used in

Description

Spatially resolved profiling of mouse cerebral cortex (visual cortex (VIS), auditory cortex (AUD) and temporal association area (TEa) unexpanded sections) using multiplexed error-robust fluorescence in situ hybridization (MERFISH).

Preview

dataset is an AnnData object with n_obs × n_vars = 13221 × 234 with slots:

Reference

Name Description Type Data type Size
var
feature_name A human-readable name for the feature, usually a gene symbol. vector object 234
layers
counts Raw counts densematrix float32 13221 × 234
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

Fang, Rongxin, Chenglong Xia, Jennie L. Close, Meng Zhang, Jiang He, Zhengkai Huang, Aaron R. Halpern, et al. 2022. “Conservation and Divergence of Cortical Cell Organization in Human and Mouse Revealed by MERFISH.” Science 377 (6601): 56–62. https://doi.org/10.1126/science.abm1741.