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Slide-seqV2 - Mouse Olfactory Bulb Puck

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2.

reference Stickels et al., 2020
Mus musculus Organism
21,624 × 4,165 Dimensions
37.54 MiB Size
log_cp10k Normalization
26-09-2024 Created
Source

Description

Gene expression library of mouse olfactory bulk puck profiled using Slide-seq V2.

Preview

An AnnData object with n_obs × n_vars = 21,624 × 4,165 with slots:

layers: counts

Data structure

Name Description Type Data type Size
var
feature_name A human-readable name for the feature, usually a gene symbol. vector object 4165
layers
counts Raw counts sparsematrix int64 21624 × 4165
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the `obs.dataset_id` field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

Download & explore

The processed dataset lives on the OpenProblems public S3 bucket, which is world-readable. Download the file directly, or copy its S3 URI to fetch it with your tool of choice.

dataset.h5ad 37.54 MiB
Download
s3://openproblems-data/resources/datasets/zenodo_spatial/slideseqv2/mouse_olfactory_bulb_puck/dataset.h5ad

Used in

Spatially Variable Genes

References

  1. Stickels, R. R., Murray, E., Kumar, P., Li, J., Marshall, J. L., Di Bella, D. J., Arlotta, P., Macosko, E. Z., & Chen, F. (2020). Highly sensitive spatial transcriptomics at near-cellular resolution with slide-seqV2. 10.1038/s41587-020-0739-1 ↗