All datasets
10X Visium - Mouse Olfactory Bulb
10X Genomics obtained fresh frozen mouse olfactory bulb tissue from BioIVT.
reference 10x Genomics, 2022
Mus musculus Organism
1,184 × 13,291 Dimensions
29.91 MiB Size
log_cp10k Normalization
26-09-2024 Created
Description
The tissue was embedded and cryosectioned as described in Visium Spatial Protocols Tissue Preparation Guide (Demonstrated Protocol CG000240). Tissue sections of 10µm were placed on Visium Gene Expression slides, then fixed and stained following Methanol Fixation, H&E Staining & Imaging for Visium Spatial Protocols (CG000160).
Preview
An AnnData object with
n_obs × n_vars = 1,184 × 13,291 with slots:
layers: counts
Data structure
| Name | Description | Type | Data type | Size |
|---|---|---|---|---|
| var | ||||
feature_id | Unique identifier for the feature, usually a ENSEMBL gene id. | vector | object | 13291 |
feature_name | A human-readable name for the feature, usually a gene symbol. | vector | object | 13291 |
| layers | ||||
counts | Raw counts | sparsematrix | float32 | 1184 × 13291 |
| uns | ||||
dataset_description | Long description of the dataset. | atomic | str | 1 |
dataset_id | A unique identifier for the dataset. This is different from the `obs.dataset_id` field, which is the identifier for the dataset from which the cell data is derived. | atomic | str | 1 |
dataset_name | A human-readable name for the dataset. | atomic | str | 1 |
dataset_organism | The organism of the sample in the dataset. | atomic | str | 1 |
dataset_reference | Bibtex reference of the paper in which the dataset was published. | atomic | str | 1 |
dataset_summary | Short description of the dataset. | atomic | str | 1 |
dataset_url | Link to the original source of the dataset. | atomic | str | 1 |
Download & explore
The processed dataset lives on the OpenProblems public S3 bucket, which is world-readable. Download the file directly, or copy its S3 URI to fetch it with your tool of choice.
dataset.h5ad 29.91 MiB
Download
s3://openproblems-data/resources/datasets/tenx_visium/visium/mouse_olfactory_bulb/dataset.h5ad Used in
References
- 10x Genomics. (2022). Adult mouse olfactory bulb. link ↗