CITE-Seq CBMC

CITE-seq profiles of 8k Cord Blood Mononuclear Cells

openproblems_v1_multimodal

Info

openproblems_v1_multimodal/citeseq_cbmc

191.3 MiB

02-02-2024

8617 × 36293

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Used in

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Description

8k cord blood mononuclear cells profiled by CITEsequsing a panel of 13 antibodies.

Preview

An AnnData object with n_obs × n_vars = 8617 × 36280 with slots:

obsm: X_svd
NameDescriptionTypeData typeSize
obs

size_factors

The size factors created by the normalisation method, if any.vectorfloat328617
var

feature_name

A human-readable name for the feature, usually a gene symbol.vectorobject36280

hvg

Whether or not the feature is considered to be a 'highly variable gene'vectorbool36280

hvg_score

A ranking of the features by hvg.vectorfloat6436280
obsm

X_svd

The resulting SVD embedding.densematrixfloat328617 × 12
layers

counts

Raw countssparsematrixfloat328617 × 36280

normalized

Normalised expression valuessparsematrixfloat328617 × 36280
uns

dataset_description

Long description of the dataset.atomicstr1

dataset_id

A unique identifier for the dataset. This is different from the `obs.dataset_id` field, which is the identifier for the dataset from which the cell data is derived.atomicstr1

dataset_name

A human-readable name for the dataset.atomicstr1

dataset_organism

The organism of the sample in the dataset.atomicstr1

dataset_reference

Bibtex reference of the paper in which the dataset was published.atomicstr1

dataset_summary

Short description of the dataset.atomicstr1

dataset_url

Link to the original source of the dataset.atomicstr1

normalization_id

Which normalization was usedatomicstr1

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