CeNGEN

Name	Description	Type	Data type	Size
obs
cell_type	Classification of the cell type based on its characteristics and function within the tissue or organism.	vector	category	100955
tissue	Specific tissue from which the cells were derived, key for context and specificity in cell studies.	vector	category	100955
batch	A batch identifier. This label is very context-dependent and may be a combination of the tissue, assay, donor, etc.	vector	category	100955
size_factors	The size factors created by the normalisation method, if any.	vector	float32	100955
var
feature_name	A human-readable name for the feature, usually a gene symbol.	vector	object	22469
hvg	Whether or not the feature is considered to be a 'highly variable gene'	vector	bool	22469
hvg_score	A ranking of the features by hvg.	vector	float64	22469
obsp
knn_connectivities	K nearest neighbors connectivities matrix.	sparsematrix	float32	100955 × 100955
knn_distances	K nearest neighbors distance matrix.	sparsematrix	float64	100955 × 100955
obsm
X_pca	The resulting PCA embedding.	densematrix	float32	100955 × 50
varm
pca_loadings	The PCA loadings matrix.	densematrix	float32	22469 × 50
layers
counts	Raw counts	sparsematrix	float32	100955 × 22469
normalized	Normalised expression values	sparsematrix	float32	100955 × 22469
uns
dataset_description	Long description of the dataset.	atomic	str	1
dataset_id	A unique identifier for the dataset. This is different from the `obs.dataset_id` field, which is the identifier for the dataset from which the cell data is derived.	atomic	str	1
dataset_name	A human-readable name for the dataset.	atomic	str	1
dataset_organism	The organism of the sample in the dataset.	atomic	str	1
dataset_reference	Bibtex reference of the paper in which the dataset was published.	atomic	str	1
dataset_summary	Short description of the dataset.	atomic	str	1
dataset_url	Link to the original source of the dataset.	atomic	str	1
knn	Supplementary K nearest neighbors data.	dict		3
normalization_id	Which normalization was used	atomic	str	1
pca_variance	The PCA variance objects.	dict		2

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