Tabula muris senis (alpha=5)

Mouse lung cells aggregated from single-cell (Dirichlet alpha=5)

Tabula muris senis (alpha=5)

RankMean scorer2Memory (GB)Runtime (min)CPU (%)NamePaperYearLibrary
10.750.752.2069.78990.60Cell2location (detection_alpha=20, reference hard-coded)2022v0.1
20.750.751.5078.50838.20Cell2location (detection_alpha=200, reference hard-coded)2022v0.1
30.740.745.4079.03974.50Cell2location (detection_alpha=20, reference NB without batch info)2022v0.1
40.720.7213.30140.081,150.10Cell2location, amortised (detection_alpha=20, reference hard-coded)2022v0.1
50.680.681.5013.031,480.40Stereoscope2020v0.16.4
60.670.675.104.72100.30RCTD2020v2.0.1
70.520.522.1057.601,404.20DestVI2022v0.16.4
80.520.520.240.4243.30Non-Negative Least Squares1987v1.9.3
90.480.480.850.39213.40Non-Negative Matrix Factorization (NMF)2009v1.1.3
10-0.02-0.0280.505.77127.00SeuratV32019v4.1.1
11-0.16-0.161.300.58905.50Tangram2021v1.0.3
12-0.25-0.253.702.021,896.70NMF-reg2019v1.1.3