Pancreas (alpha=5)
Raw
Scaled
| Rank | Name | Mean score | r2 | r2 | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Cell2location (detection_alpha=20, reference NB without batch info) | 0.87 | 0.68 | 0.87 | 3.20 | 71.30 | 1,512.60 | 2022 | v0.1.3 | |
| 2 | Cell2location (detection_alpha=1, reference hard-coded) | 0.87 | 0.68 | 0.87 | 2.00 | 55.37 | 1,498.00 | 2022 | v0.1.3 | |
| 3 | Cell2location (detection_alpha=20, reference hard-coded) | 0.87 | 0.68 | 0.87 | 1.60 | 85.07 | 1,450.80 | 2022 | v0.1.3 | |
| 4 | Cell2location (detection_alpha=200, reference hard-coded) | 0.87 | 0.67 | 0.87 | 4.90 | 87.80 | 1,403.50 | 2022 | v0.1.3 | |
| 5 | Cell2location, amortised (detection_alpha=20, reference hard-coded) | 0.87 | 0.66 | 0.87 | 17.60 | 121.60 | 1,840.70 | 2022 | v0.1.3 | |
| 6 | Non-Negative Least Squares | 0.74 | 0.35 | 0.74 | 0.24 | 0.58 | 27.10 | 1987 | v1.9.3 | |
| 7 | RCTD | 0.69 | 0.21 | 0.69 | 2.40 | 10.45 | 17.60 | 2020 | v2.1.7 | |
| 8 | Stereoscope | 0.67 | 0.18 | 0.67 | 1.20 | 10.60 | 928.30 | 2020 | v0.20.0 | |
| 9 | NMF-reg | 0.46 | -0.35 | 0.46 | 1.40 | 0.68 | 1,983.50 | 2019 | v1.1.3 | |
| 10 | Non-Negative Matrix Factorization (NMF) | 0.23 | -0.93 | 0.23 | 0.66 | 0.50 | 348.00 | 2009 | v1.1.3 | |
| 11 | DestVI | 0.18 | -1.05 | 0.18 | 1.60 | 10.82 | 726.70 | 2022 | v0.20.0 | |
| 12 | Tangram | -0.10 | -1.76 | -0.10 | 1.00 | 0.81 | 336.30 | 2021 | v1.0.3 | |
| 13 | SeuratV3 | -0.38 | -2.46 | -0.38 | 63.80 | 2.37 | 158.10 | 2019 | v4.3.0 |