Pancreas (alpha=5)
Pancreas (alpha=5)
| Rank | r2 | Memory (GB) | Runtime (min) | CPU (%) | Name | Paper | Code | Year |
|---|---|---|---|---|---|---|---|---|
| 2 | -1.11 | 7.70 | 1.15 | 19.00 | Random assignment (baseline) | v0.6.0 | 2022 | |
| 7 | -4.47 | 7.70 | 0.60 | 34.80 | Non-Negative Least Squares | v1.9.0 | 1987 | |
| 3 | -1.59 | 7.70 | 1.08 | 194.90 | Non-Negative Matrix Factorization (NMF) | v1.1.2 | 2009 | |
| 4 | -3.41 | 9.20 | 1.62 | 2,205.40 | NMF-reg | v1.1.2 | 2019 | |
| 1 | 0.06 | 7.90 | 15.22 | 1,403.30 | Stereoscope | v0.16.4 | 2020 | |
| 5 | -3.50 | 17.90 | 7.32 | 98.80 | RCTD | v2.0.1 | 2020 | |
| 6 | -3.55 | 131.70 | 7.42 | 111.00 | SeuratV3 | v4.1.1 | 2019 | |
| 9 | -10.20 | 7.70 | 67.95 | 1,470.00 | DestVI | v0.16.4 | 2022 | |
| 12 | -124.50 | 7.90 | 73.53 | 970.90 | Cell2location (detection_alpha=20, reference hard-coded) | v0.1 | 2022 | |
| 11 | -118.02 | 9.80 | 87.05 | 1,151.40 | Cell2location (detection_alpha=20, reference NB without batch info) | v0.1 | 2022 | |
| 10 | -79.74 | 7.90 | 164.13 | 896.60 | Cell2location (detection_alpha=200, reference hard-coded) | v0.1 | 2022 | |
| 8 | -5.73 | 21.90 | 96.20 | 1,358.50 | Cell2location, amortised (detection_alpha=20, reference hard-coded) | v0.1 | 2022 |