Pancreas (alpha=5)

Human pancreas cells aggregated from single-cell (Dirichlet alpha=5)

Pancreas (alpha=5)

Rankr2Memory (GB)Runtime (min)CPU (%)NamePaperCodeYear
2-1.117.701.1519.00Random assignment (baseline)

v0.6.0

2022
7-4.477.700.6034.80Non-Negative Least Squares

v1.9.0

1987
3-1.597.701.08194.90Non-Negative Matrix Factorization (NMF)

v1.1.2

2009
4-3.419.201.622,205.40NMF-reg

v1.1.2

2019
10.067.9015.221,403.30Stereoscope

v0.16.4

2020
5-3.5017.907.3298.80RCTD

v2.0.1

2020
6-3.55131.707.42111.00SeuratV3

v4.1.1

2019
9-10.207.7067.951,470.00DestVI

v0.16.4

2022
12-124.507.9073.53970.90Cell2location (detection_alpha=20, reference hard-coded)

v0.1

2022
11-118.029.8087.051,151.40Cell2location (detection_alpha=20, reference NB without batch info)

v0.1

2022
10-79.747.90164.13896.60Cell2location (detection_alpha=200, reference hard-coded)

v0.1

2022
8-5.7321.9096.201,358.50Cell2location, amortised (detection_alpha=20, reference hard-coded)

v0.1

2022