Pancreas (alpha=1)
Pancreas (alpha=1)
| Rank | r2 | Memory (GB) | Runtime (min) | CPU (%) | Name | Paper | Code | Year |
|---|---|---|---|---|---|---|---|---|
| 3 | -0.91 | 7.30 | 1.32 | 119.40 | Non-Negative Matrix Factorization (NMF) | v1.1.2 | 2009 | |
| 2 | -0.64 | 7.30 | 1.30 | 17.20 | Random assignment (baseline) | v0.6.0 | 2022 | |
| 8 | -2.72 | 4.60 | 0.69 | 43.60 | Non-Negative Least Squares | v1.9.0 | 1987 | |
| 5 | -2.24 | 8.70 | 1.17 | 1,075.30 | NMF-reg | v1.1.2 | 2019 | |
| 1 | 0.10 | 7.60 | 9.67 | 1,535.80 | Stereoscope | v0.16.4 | 2020 | |
| 7 | -2.60 | 7.60 | 48.55 | 1,529.40 | DestVI | v0.16.4 | 2022 | |
| 4 | -1.92 | 17.00 | 7.12 | 96.60 | RCTD | v2.0.1 | 2020 | |
| 11 | -71.69 | 7.80 | 60.50 | 926.90 | Cell2location (detection_alpha=20, reference hard-coded) | v0.1 | 2022 | |
| 6 | -2.43 | 315.30 | 9.22 | 119.50 | SeuratV3 | v4.1.1 | 2019 | |
| 12 | -71.94 | 9.50 | 113.75 | 1,075.80 | Cell2location (detection_alpha=20, reference NB without batch info) | v0.1 | 2022 | |
| 10 | -64.63 | 7.80 | 146.03 | 1,550.00 | Cell2location (detection_alpha=200, reference hard-coded) | v0.1 | 2022 | |
| 9 | -3.43 | 20.50 | 91.97 | 626.70 | Cell2location, amortised (detection_alpha=20, reference hard-coded) | v0.1 | 2022 |