Pancreas (alpha=1)
Raw
Scaled
| Rank | Name | Mean score | r2 | r2 | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Cell2location, amortised (detection_alpha=20, reference hard-coded) | 0.91 | 0.83 | 0.91 | 12.20 | 77.78 | 590.20 | 2022 | v0.1.3 | |
| 2 | Cell2location (detection_alpha=20, reference NB without batch info) | 0.90 | 0.83 | 0.90 | 3.20 | 50.80 | 1,496.30 | 2022 | v0.1.3 | |
| 3 | Cell2location (detection_alpha=1, reference hard-coded) | 0.90 | 0.82 | 0.90 | 4.30 | 70.83 | 1,516.20 | 2022 | v0.1.3 | |
| 4 | Cell2location (detection_alpha=20, reference hard-coded) | 0.90 | 0.82 | 0.90 | 1.30 | 53.85 | 459.60 | 2022 | v0.1.3 | |
| 5 | Cell2location (detection_alpha=200, reference hard-coded) | 0.90 | 0.82 | 0.90 | 1.40 | 40.17 | 1,346.10 | 2022 | v0.1.3 | |
| 6 | Non-Negative Least Squares | 0.80 | 0.65 | 0.80 | 0.66 | 0.54 | 27.70 | 1987 | v1.9.3 | |
| 7 | RCTD | 0.59 | 0.28 | 0.59 | 2.40 | 10.28 | 17.80 | 2020 | v2.1.7 | |
| 8 | Stereoscope | 0.52 | 0.16 | 0.52 | 1.20 | 10.28 | 904.70 | 2020 | v0.20.0 | |
| 9 | NMF-reg | 0.48 | 0.09 | 0.48 | 1.50 | 1.68 | 1,095.70 | 2019 | v1.1.3 | |
| 10 | Non-Negative Matrix Factorization (NMF) | 0.44 | 0.02 | 0.44 | 0.66 | 0.55 | 884.90 | 2009 | v1.1.3 | |
| 11 | DestVI | 0.20 | -0.40 | 0.20 | 1.70 | 28.72 | 1,060.20 | 2022 | v0.20.0 | |
| 12 | Tangram | -0.21 | -1.12 | -0.21 | 1.00 | 0.64 | 639.00 | 2021 | v1.0.3 | |
| 13 | SeuratV3 | -0.61 | -1.82 | -0.61 | 65.40 | 2.78 | 150.40 | 2019 | v4.3.0 |