Pancreas (alpha=1)

Human pancreas cells aggregated from single-cell (Dirichlet alpha=1)

Pancreas (alpha=1)

Rankr2Memory (GB)Runtime (min)CPU (%)NamePaperCodeYear
3-0.917.301.32119.40Non-Negative Matrix Factorization (NMF)

v1.1.2

2009
2-0.647.301.3017.20Random assignment (baseline)

v0.6.0

2022
8-2.724.600.6943.60Non-Negative Least Squares

v1.9.0

1987
5-2.248.701.171,075.30NMF-reg

v1.1.2

2019
10.107.609.671,535.80Stereoscope

v0.16.4

2020
7-2.607.6048.551,529.40DestVI

v0.16.4

2022
4-1.9217.007.1296.60RCTD

v2.0.1

2020
11-71.697.8060.50926.90Cell2location (detection_alpha=20, reference hard-coded)

v0.1

2022
6-2.43315.309.22119.50SeuratV3

v4.1.1

2019
12-71.949.50113.751,075.80Cell2location (detection_alpha=20, reference NB without batch info)

v0.1

2022
10-64.637.80146.031,550.00Cell2location (detection_alpha=200, reference hard-coded)

v0.1

2022
9-3.4320.5091.97626.70Cell2location, amortised (detection_alpha=20, reference hard-coded)

v0.1

2022