Pancreas (alpha=0.5)
Raw
Scaled
| Rank | Name | Mean score | r2 | r2 | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Cell2location, amortised (detection_alpha=20, reference hard-coded) | 0.94 | 0.89 | 0.94 | 12.20 | 78.78 | 599.10 | 2022 | v0.1.3 | |
| 2 | Cell2location (detection_alpha=20, reference hard-coded) | 0.93 | 0.88 | 0.93 | 1.20 | 42.92 | 1,374.60 | 2022 | v0.1.3 | |
| 3 | Cell2location (detection_alpha=1, reference hard-coded) | 0.93 | 0.88 | 0.93 | 1.30 | 104.55 | 1,386.30 | 2022 | v0.1.3 | |
| 4 | Cell2location (detection_alpha=200, reference hard-coded) | 0.93 | 0.87 | 0.93 | 3.80 | 111.18 | 1,416.20 | 2022 | v0.1.3 | |
| 5 | Cell2location (detection_alpha=20, reference NB without batch info) | 0.93 | 0.87 | 0.93 | 3.20 | 51.87 | 1,406.90 | 2022 | v0.1.3 | |
| 6 | Non-Negative Least Squares | 0.90 | 0.83 | 0.90 | 0.66 | 0.12 | 120.40 | 1987 | v1.9.3 | |
| 7 | Non-Negative Matrix Factorization (NMF) | 0.74 | 0.57 | 0.74 | 0.66 | 0.29 | 176.60 | 2009 | v1.1.3 | |
| 8 | RCTD | 0.58 | 0.30 | 0.58 | 2.40 | 12.07 | 18.60 | 2020 | v2.1.7 | |
| 9 | Stereoscope | 0.50 | 0.15 | 0.50 | 1.20 | 10.63 | 939.70 | 2020 | v0.20.0 | |
| 10 | NMF-reg | 0.41 | 0.01 | 0.41 | 1.50 | 0.85 | 1,789.20 | 2019 | v1.1.3 | |
| 11 | DestVI | 0.18 | -0.38 | 0.18 | 2.00 | 20.28 | 2,222.50 | 2022 | v0.20.0 | |
| 12 | SeuratV3 | -0.16 | -0.95 | -0.16 | 63.10 | 2.63 | 161.40 | 2019 | v4.3.0 | |
| 13 | Tangram | -0.18 | -0.98 | -0.18 | 1.00 | 1.47 | 565.50 | 2021 | v1.0.3 |