Pancreas (alpha=0.5)

Human pancreas cells aggregated from single-cell (Dirichlet alpha=0.5)

Pancreas (alpha=0.5)

Rankr2Memory (GB)Runtime (min)CPU (%)NamePaperCodeYear
2-0.237.700.65144.90Non-Negative Matrix Factorization (NMF)

v1.1.2

2009
3-0.477.701.8327.20Random assignment (baseline)

v0.6.0

2022
7-1.327.600.6540.30Non-Negative Least Squares

v1.9.0

1987
4-0.919.203.501,673.40NMF-reg

v1.1.2

2019
10.117.8015.081,760.60Stereoscope

v0.16.4

2020
5-0.9617.905.5594.10RCTD

v2.0.1

2020
8-1.67316.5011.17112.60SeuratV3

v4.1.1

2019
12-107.299.90130.571,723.20Cell2location (detection_alpha=20, reference NB without batch info)

v0.1

2022
11-72.117.9073.231,553.50Cell2location (detection_alpha=20, reference hard-coded)

v0.1

2022
6-1.167.90203.22913.90DestVI

v0.16.4

2022
10-44.828.2067.851,051.50Cell2location (detection_alpha=200, reference hard-coded)

v0.1

2022
9-1.9622.5068.321,325.20Cell2location, amortised (detection_alpha=20, reference hard-coded)

v0.1

2022