Pancreas (alpha=0.5)
Pancreas (alpha=0.5)
| Rank | r2 | Memory (GB) | Runtime (min) | CPU (%) | Name | Paper | Code | Year |
|---|---|---|---|---|---|---|---|---|
| 2 | -0.23 | 7.70 | 0.65 | 144.90 | Non-Negative Matrix Factorization (NMF) | v1.1.2 | 2009 | |
| 3 | -0.47 | 7.70 | 1.83 | 27.20 | Random assignment (baseline) | v0.6.0 | 2022 | |
| 7 | -1.32 | 7.60 | 0.65 | 40.30 | Non-Negative Least Squares | v1.9.0 | 1987 | |
| 4 | -0.91 | 9.20 | 3.50 | 1,673.40 | NMF-reg | v1.1.2 | 2019 | |
| 1 | 0.11 | 7.80 | 15.08 | 1,760.60 | Stereoscope | v0.16.4 | 2020 | |
| 5 | -0.96 | 17.90 | 5.55 | 94.10 | RCTD | v2.0.1 | 2020 | |
| 8 | -1.67 | 316.50 | 11.17 | 112.60 | SeuratV3 | v4.1.1 | 2019 | |
| 12 | -107.29 | 9.90 | 130.57 | 1,723.20 | Cell2location (detection_alpha=20, reference NB without batch info) | v0.1 | 2022 | |
| 11 | -72.11 | 7.90 | 73.23 | 1,553.50 | Cell2location (detection_alpha=20, reference hard-coded) | v0.1 | 2022 | |
| 6 | -1.16 | 7.90 | 203.22 | 913.90 | DestVI | v0.16.4 | 2022 | |
| 10 | -44.82 | 8.20 | 67.85 | 1,051.50 | Cell2location (detection_alpha=200, reference hard-coded) | v0.1 | 2022 | |
| 9 | -1.96 | 22.50 | 68.32 | 1,325.20 | Cell2location, amortised (detection_alpha=20, reference hard-coded) | v0.1 | 2022 |