sciCAR Cell Lines

5k cells from a time-series of dexamethasone treatment sequenced by sci-CAR, a combinatorial indexing-based co-assay that jointly profiles chromatin accessibility and mRNA.

sciCAR Cell Lines

RankMean squared errorkNN Area Under the CurveMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
20.890.090.681.38340.50Procrustes

v1.9.0

1975
51.000.040.914.45577.70Harmonic Alignment (sqrt CPM)

v0.0

2020
30.900.071.904.1359.90Mutual Nearest Neighbors (log CPM)

v1.12.3

2018
41.000.063.307.67331.70Harmonic Alignment (log scran)

v0.0

2020
10.720.103.304.3371.70Mutual Nearest Neighbors (log scran)

v1.12.3

2018