Zebrafish (random split)

90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly.

Zebrafish (random split)

RankF1 scoreMacro F1 scoreAccuracyMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
140.050.010.181.000.6227.10Majority Vote

v0.6.0

2022
30.840.690.841.602.45230.30Logistic regression (log CPM)

v1.1.2

2013
130.080.040.081.001.2514.10Random Labels

v0.6.0

2022
40.830.680.831.603.621,134.40Multilayer perceptron (log CPM)

v1.1.2

1990
90.790.630.792.501.78243.80K-neighbors classifier (log CPM)

v1.1.2

1967
50.800.680.812.106.001,008.10XGBoost (log CPM)

v1.6.2

2016
70.790.670.807.8012.73605.10XGBoost (log scran)

v1.6.2

2016
60.810.650.818.8015.50106.60K-neighbors classifier (log scran)

v1.1.2

1967
10.850.730.858.8012.00164.60Logistic regression (log scran)

v1.1.2

2013
20.840.700.848.8021.05898.00Multilayer perceptron (log scran)

v1.1.2

1990
110.580.320.673.40105.881,147.00scArches+scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
80.790.520.823.3096.701,155.00scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
100.770.500.805.00190.13909.00scANVI (All genes)

v0.17.2

2021
120.520.290.635.80247.001,032.50scArches+scANVI (All genes)

v0.17.2

2021