Zebrafish (by labels)

90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory.

Zebrafish (by labels)

RankF1 scoreMacro F1 scoreAccuracyMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
140.000.000.001.002.476.10Majority Vote

v0.6.0

2022
10.280.220.261.902.32546.20Multilayer perceptron (log CPM)

v1.1.2

1990
130.040.020.031.001.979.40Random Labels

v0.6.0

2022
70.240.210.211.903.87162.50Logistic regression (log CPM)

v1.1.2

2013
90.240.180.202.401.60153.40K-neighbors classifier (log CPM)

v1.1.2

1967
30.280.210.222.304.32994.30XGBoost (log CPM)

v1.6.2

2016
40.300.200.247.9018.15279.70XGBoost (log scran)

v1.6.2

2016
50.270.210.228.8014.08136.10Logistic regression (log scran)

v1.1.2

2013
100.210.200.208.8015.28122.90K-neighbors classifier (log scran)

v1.1.2

1967
120.120.130.128.8021.17688.40Multilayer perceptron (log scran)

v1.1.2

1990
20.250.250.231.8069.53173.50scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
110.120.180.136.9096.771,935.30scArches+scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
60.240.210.214.60136.581,090.80scArches+scANVI (All genes)

v0.17.2

2021
80.220.250.203.80188.45897.10scANVI (All genes)

v0.17.2

2021