Tabula Muris Senis Lung (random split)

All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly.

Rank	F1 score	Macro F1 score	Accuracy	Memory (GB)	Runtime (min)	CPU (%)	Name	Code	Year
14	0.06	0.01	0.20	1.40	0.73	29.10	Majority Vote	v0.6.0	2022
13	0.08	0.02	0.08	1.40	0.75	32.00	Random Labels	v0.6.0	2022
5	0.86	0.76	0.87	3.60	1.67	243.80	K-neighbors classifier (log CPM)	v1.1.2	1967
4	0.93	0.76	0.93	2.50	1.32	192.00	Logistic regression (log CPM)	v1.1.2	2013
2	0.93	0.78	0.93	2.60	3.32	963.50	Multilayer perceptron (log CPM)	v1.1.2	1990
6	0.87	0.69	0.87	2.90	6.10	1,667.20	XGBoost (log CPM)	v1.6.2	2016
7	0.86	0.72	0.87	6.70	17.68	631.60	XGBoost (log scran)	v1.6.2	2016
3	0.93	0.75	0.93	8.50	13.37	258.90	Logistic regression (log scran)	v1.1.2	2013
8	0.80	0.68	0.80	8.50	12.30	108.40	K-neighbors classifier (log scran)	v1.1.2	1967
1	0.94	0.79	0.94	8.50	12.62	331.70	Multilayer perceptron (log scran)	v1.1.2	1990
10	0.71	0.25	0.77	4.90	41.15	1,313.40	scANVI (Seurat v3 2000 HVG)	v0.17.1	2021
11	0.63	0.20	0.72	5.60	119.08	386.60	scArches+scANVI (All genes)	v0.17.1	2021
9	0.78	0.36	0.83	4.80	190.87	1,535.00	scANVI (All genes)	v0.17.1	2021
12	0.61	0.20	0.71	7.10	41.70	1,432.60	scArches+scANVI (Seurat v3 2000 HVG)	v0.17.2	2021