Tabula Muris Senis Lung (random split)
Raw
Scaled
Rank | Name | Mean score | Accuracy | Accuracy | F1 score | F1 score | Macro F1 score | Macro F1 score | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
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1 | Multilayer perceptron (log scran) | 0.91 | 0.93 | 0.92 | 0.93 | 0.92 | 0.88 | 0.88 | 5.30 | 37.62 | 777.90 | 1990 | v1.1.3 | |
2 | Logistic regression (log CP10k) | 0.91 | 0.93 | 0.92 | 0.93 | 0.92 | 0.89 | 0.88 | 1.30 | 2.85 | 1,254.10 | 2013 | v1.1.3 | |
3 | Multilayer perceptron (log CP10k) | 0.91 | 0.92 | 0.92 | 0.92 | 0.92 | 0.89 | 0.89 | 1.30 | 17.62 | 709.00 | 1990 | v1.1.3 | |
4 | Logistic regression (log scran) | 0.91 | 0.92 | 0.92 | 0.92 | 0.92 | 0.89 | 0.89 | 5.40 | 22.95 | 293.30 | 2013 | v1.1.3 | |
5 | Seurat reference mapping (SCTransform) | 0.89 | 0.91 | 0.90 | 0.91 | 0.90 | 0.88 | 0.88 | 138.70 | 10.60 | 113.50 | 2021 | v4.3.0 | |
6 | K-neighbors classifier (log scran) | 0.86 | 0.88 | 0.87 | 0.88 | 0.87 | 0.85 | 0.84 | 5.30 | 9.50 | 119.00 | 1967 | v1.1.3 | |
7 | K-neighbors classifier (log CP10k) | 0.86 | 0.87 | 0.86 | 0.87 | 0.86 | 0.86 | 0.86 | 2.10 | 2.37 | 353.10 | 1967 | v1.1.3 | |
8 | XGBoost (log CP10k) | 0.84 | 0.87 | 0.86 | 0.87 | 0.85 | 0.83 | 0.82 | 1.50 | 27.75 | 276.30 | 2016 | v1.6.2 | |
9 | XGBoost (log scran) | 0.83 | 0.86 | 0.85 | 0.86 | 0.85 | 0.81 | 0.81 | 5.60 | 22.75 | 315.20 | 2016 | v1.6.2 | |
10 | scANVI (Seurat v3 2000 HVG) | 0.68 | 0.86 | 0.84 | 0.82 | 0.80 | 0.42 | 0.40 | 9.30 | 50.58 | 2,406.30 | 2021 | v0.20.0 | |
11 | scANVI (All genes) | 0.62 | 0.81 | 0.80 | 0.76 | 0.74 | 0.34 | 0.32 | 3.80 | 76.55 | 2,788.30 | 2021 | v0.20.0 | |
12 | scArches+scANVI (Seurat v3 2000 HVG) | 0.58 | 0.79 | 0.77 | 0.72 | 0.70 | 0.29 | 0.27 | 9.30 | 72.78 | 2,319.60 | 2021 | v0.20.0 | |
13 | scArches+scANVI (All genes) | 0.57 | 0.78 | 0.76 | 0.71 | 0.69 | 0.28 | 0.26 | 6.10 | 46.10 | 2,723.50 | 2021 | v0.20.0 | |
14 | Majority Vote | 0.04 | 0.22 | 0.15 | 0.08 | -0.01 | 0.01 | -0.01 | 0.22 | 0.39 | 37.30 | 2022 | v0.7.0 |