Tabula Muris Senis Lung (random split)

All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type).
Raw Scaled
RankNameMean scoreAccuracyAccuracyF1 scoreF1 scoreMacro F1 scoreMacro F1 scoreMemory (GB)Runtime (min)CPU (%)PaperYearLibrary
1Multilayer perceptron (log scran)0.910.930.920.930.920.880.885.3037.62777.901990v1.1.3
2Logistic regression (log CP10k)0.910.930.920.930.920.890.881.302.851,254.102013v1.1.3
3Multilayer perceptron (log CP10k)0.910.920.920.920.920.890.891.3017.62709.001990v1.1.3
4Logistic regression (log scran)0.910.920.920.920.920.890.895.4022.95293.302013v1.1.3
5Seurat reference mapping (SCTransform)0.890.910.900.910.900.880.88138.7010.60113.502021v4.3.0
6K-neighbors classifier (log scran)0.860.880.870.880.870.850.845.309.50119.001967v1.1.3
7K-neighbors classifier (log CP10k)0.860.870.860.870.860.860.862.102.37353.101967v1.1.3
8XGBoost (log CP10k)0.840.870.860.870.850.830.821.5027.75276.302016v1.6.2
9XGBoost (log scran)0.830.860.850.860.850.810.815.6022.75315.202016v1.6.2
10scANVI (Seurat v3 2000 HVG)0.680.860.840.820.800.420.409.3050.582,406.302021v0.20.0
11scANVI (All genes)0.620.810.800.760.740.340.323.8076.552,788.302021v0.20.0
12scArches+scANVI (Seurat v3 2000 HVG)0.580.790.770.720.700.290.279.3072.782,319.602021v0.20.0
13scArches+scANVI (All genes)0.570.780.760.710.690.280.266.1046.102,723.502021v0.20.0
14Majority Vote0.040.220.150.08-0.010.01-0.010.220.3937.302022v0.7.0