Pancreas (random split)

Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type).
Raw Scaled
RankNameMean scoreAccuracyAccuracyF1 scoreF1 scoreMacro F1 scoreMacro F1 scoreMemory (GB)Runtime (min)CPU (%)PaperYearLibrary
1Multilayer perceptron (log CP10k)0.970.990.980.990.980.960.962.208.25518.401990v1.1.3
2Logistic regression (log CP10k)0.970.990.980.990.980.960.952.202.83469.602013v1.1.3
3XGBoost (log CP10k)0.960.980.970.980.970.950.952.6012.42316.902016v1.6.2
4Multilayer perceptron (log scran)0.950.980.980.980.980.910.918.5022.071,000.001990v1.1.3
5Seurat reference mapping (SCTransform)0.950.980.970.980.970.900.89170.6015.63120.802021v4.3.0
6K-neighbors classifier (log CP10k)0.940.960.950.960.950.920.922.303.13264.801967v1.1.3
7XGBoost (log scran)0.940.970.960.970.960.910.908.5019.72291.502016v1.6.2
8scANVI (Seurat v3 2000 HVG)0.870.980.970.970.970.690.672.3018.20643.902021v0.20.0
9K-neighbors classifier (log scran)0.860.950.940.950.940.720.708.508.97122.201967v1.1.3
10scANVI (All genes)0.830.970.960.960.950.600.574.4049.281,512.302021v0.20.0
11Logistic regression (log scran)0.810.950.930.940.930.610.588.3017.17130.602013v1.1.3
12scArches+scANVI (Seurat v3 2000 HVG)0.790.960.950.950.930.540.503.7024.721,223.002021v0.20.0
13scArches+scANVI (All genes)0.790.960.940.950.930.530.505.6026.252,670.802021v0.20.0
14Majority Vote0.040.350.180.18-0.040.04-0.030.241.7811.802022v0.7.0