Pancreas (random split)

Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly.

Pancreas (random split)

RankF1 scoreMacro F1 scoreAccuracyMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
130.210.070.213.703.0512.60Random Labels

v0.6.0

2022
140.170.040.343.605.207.00Majority Vote

v0.6.0

2022
90.950.840.956.500.781,274.60K-neighbors classifier (log CPM)

v1.1.2

1967
20.980.960.986.401.42474.80Multilayer perceptron (log CPM)

v1.1.2

1990
10.980.960.986.500.91486.10Logistic regression (log CPM)

v1.1.2

2013
30.980.890.988.901.451,780.80XGBoost (log CPM)

v1.6.2

2016
110.940.530.959.6039.951,738.30scArches+scANVI (All genes)

v0.17.1

2021
120.940.590.9522.5013.28208.60Logistic regression (log scran)

v1.1.2

2013
40.980.850.9822.5014.55458.70Multilayer perceptron (log scran)

v1.1.2

1990
70.960.780.9622.5013.65123.10K-neighbors classifier (log scran)

v1.1.2

1967
100.940.530.956.9091.871,059.70scArches+scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
60.970.680.975.8048.921,279.30scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
50.970.880.9723.1014.78292.20XGBoost (log scran)

v1.6.2

2016
80.970.670.976.10158.48956.90scANVI (All genes)

v0.17.1

2021