CeNGEN (random split)

100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly.

CeNGEN (random split)

RankF1 scoreMacro F1 scoreAccuracyMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
140.010.000.051.000.8122.40Majority Vote

v0.6.0

2022
130.020.010.021.000.5434.70Random Labels

v0.6.0

2022
70.830.710.832.801.93954.80K-neighbors classifier (log CPM)

v1.1.2

1967
40.850.760.861.7030.73557.70Multilayer perceptron (log CPM)

v1.1.2

1990
30.850.800.851.9014.532,034.80XGBoost (log CPM)

v1.6.2

2016
10.890.810.891.9048.57941.60Logistic regression (log CPM)

v1.1.2

2013
60.840.750.847.5035.73104.30K-neighbors classifier (log scran)

v1.1.2

1967
80.820.760.827.1052.98688.10XGBoost (log scran)

v1.6.2

2016
50.840.780.837.5061.62612.00Logistic regression (log scran)

v1.1.2

2013
20.880.810.877.50112.971,294.90Multilayer perceptron (log scran)

v1.1.2

1990
100.540.220.624.4049.121,437.10scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
110.290.080.4210.70225.401,612.20scArches+scANVI (All genes)

v0.17.2

2021
120.250.070.394.50319.451,325.40scArches+scANVI (Seurat v3 2000 HVG)

v0.17.2

2021
90.560.230.669.90144.851,633.00scANVI (All genes)

v0.17.2

2021