CeNGEN (random split)
Raw
Scaled
Rank | Name | Mean score | Accuracy | Accuracy | F1 score | F1 score | Macro F1 score | Macro F1 score | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Logistic regression (log CP10k) | 0.86 | 0.89 | 0.89 | 0.89 | 0.89 | 0.81 | 0.81 | 1.90 | 17.05 | 1,695.90 | 2013 | v1.1.3 | |
2 | Multilayer perceptron (log scran) | 0.85 | 0.88 | 0.87 | 0.88 | 0.87 | 0.79 | 0.79 | 6.80 | 41.05 | 1,629.70 | 1990 | v1.1.3 | |
3 | XGBoost (log CP10k) | 0.83 | 0.85 | 0.84 | 0.85 | 0.85 | 0.79 | 0.79 | 2.00 | 13.03 | 1,952.80 | 2016 | v1.6.2 | |
4 | Multilayer perceptron (log CP10k) | 0.83 | 0.86 | 0.86 | 0.86 | 0.85 | 0.77 | 0.77 | 1.70 | 8.65 | 5,600.10 | 1990 | v1.1.3 | |
5 | K-neighbors classifier (log CP10k) | 0.83 | 0.85 | 0.85 | 0.86 | 0.86 | 0.77 | 0.77 | 2.80 | 5.10 | 426.10 | 1967 | v1.1.3 | |
6 | Logistic regression (log scran) | 0.81 | 0.83 | 0.82 | 0.84 | 0.84 | 0.78 | 0.78 | 6.80 | 58.55 | 565.70 | 2013 | v1.1.3 | |
7 | K-neighbors classifier (log scran) | 0.81 | 0.84 | 0.84 | 0.84 | 0.84 | 0.75 | 0.75 | 6.80 | 39.20 | 104.70 | 1967 | v1.1.3 | |
8 | Seurat reference mapping (SCTransform) | 0.80 | 0.83 | 0.83 | 0.83 | 0.83 | 0.75 | 0.74 | 902.00 | 34.05 | 124.30 | 2021 | v4.3.0 | |
9 | XGBoost (log scran) | 0.80 | 0.82 | 0.82 | 0.83 | 0.82 | 0.76 | 0.76 | 6.80 | 45.57 | 785.40 | 2016 | v1.6.2 | |
10 | scANVI (All genes) | 0.49 | 0.67 | 0.66 | 0.58 | 0.57 | 0.24 | 0.24 | 10.00 | 131.90 | 2,577.30 | 2021 | v0.20.0 | |
11 | scANVI (Seurat v3 2000 HVG) | 0.45 | 0.62 | 0.62 | 0.53 | 0.53 | 0.21 | 0.21 | 9.40 | 177.03 | 1,926.20 | 2021 | v0.20.0 | |
12 | scArches+scANVI (All genes) | 0.25 | 0.42 | 0.41 | 0.29 | 0.28 | 0.08 | 0.07 | 13.10 | 137.82 | 2,733.40 | 2021 | v0.20.0 | |
13 | scArches+scANVI (Seurat v3 2000 HVG) | 0.23 | 0.38 | 0.37 | 0.27 | 0.26 | 0.07 | 0.06 | 11.00 | 98.17 | 2,411.10 | 2021 | v0.20.0 | |
14 | Majority Vote | 0.01 | 0.05 | 0.04 | 0.01 | -0.01 | 0.00 | -0.01 | 0.23 | 1.10 | 15.20 | 2022 | v0.7.0 |