CeNGEN (split by batch)

100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type).
Raw Scaled
RankNameMean scoreAccuracyAccuracyF1 scoreF1 scoreMacro F1 scoreMacro F1 scoreMemory (GB)Runtime (min)CPU (%)PaperYearLibrary
1Logistic regression (log CP10k)0.760.880.880.870.870.530.521.8017.881,402.202013v1.1.3
2Multilayer perceptron (log scran)0.740.870.860.870.860.490.496.8041.851,580.001990v1.1.3
3Seurat reference mapping (SCTransform)0.720.850.850.840.840.480.48856.4033.12119.102021v4.3.0
4XGBoost (log scran)0.710.830.830.840.840.470.476.8053.431,068.402016v1.6.2
5XGBoost (log CP10k)0.710.830.830.830.830.460.461.9014.432,167.502016v1.6.2
6K-neighbors classifier (log CP10k)0.690.820.820.840.830.420.422.602.30292.301967v1.1.3
7Logistic regression (log scran)0.680.770.770.800.800.480.476.8052.22603.402013v1.1.3
8Multilayer perceptron (log CP10k)0.680.830.830.840.830.370.371.6089.723,727.501990v1.1.3
9K-neighbors classifier (log scran)0.640.780.780.800.800.340.346.8039.62106.401967v1.1.3
10scANVI (All genes)0.480.650.640.620.610.200.2011.60166.772,504.502021v0.20.0
11scANVI (Seurat v3 2000 HVG)0.220.270.260.230.210.180.1820.50177.301,772.902021v0.20.0
12scArches+scANVI (All genes)0.170.250.240.200.180.090.0915.70118.402,769.002021v0.20.0
13scArches+scANVI (Seurat v3 2000 HVG)0.040.080.070.040.020.040.0417.9068.902,431.202021v0.20.0
14Majority Vote-0.000.020.010.00-0.020.00-0.000.990.8021.202022v0.7.0