CeNGEN (by batch)
CeNGEN (by batch)
| Rank | F1 score | Macro F1 score | Accuracy | Memory (GB) | Runtime (min) | CPU (%) | Name | Paper | Code | Year |
|---|---|---|---|---|---|---|---|---|---|---|
| 14 | 0.00 | 0.00 | 0.02 | 1.00 | 1.68 | 10.60 | Majority Vote | v0.6.0 | 2022 | |
| 13 | 0.02 | 0.00 | 0.01 | 1.00 | 0.72 | 25.50 | Random Labels | v0.6.0 | 2022 | |
| 8 | 0.79 | 0.33 | 0.75 | 2.60 | 1.92 | 285.70 | K-neighbors classifier (log CPM) | v1.1.2 | 1967 | |
| 4 | 0.84 | 0.47 | 0.83 | 1.90 | 16.52 | 2,234.40 | XGBoost (log CPM) | v1.6.2 | 2016 | |
| 5 | 0.83 | 0.35 | 0.83 | 1.60 | 37.43 | 677.00 | Multilayer perceptron (log CPM) | v1.1.2 | 1990 | |
| 1 | 0.87 | 0.52 | 0.88 | 1.80 | 55.43 | 1,047.30 | Logistic regression (log CPM) | v1.1.2 | 2013 | |
| 7 | 0.80 | 0.34 | 0.79 | 7.50 | 30.58 | 105.10 | K-neighbors classifier (log scran) | v1.1.2 | 1967 | |
| 2 | 0.87 | 0.49 | 0.87 | 7.50 | 43.20 | 1,073.00 | Multilayer perceptron (log scran) | v1.1.2 | 1990 | |
| 3 | 0.84 | 0.47 | 0.83 | 7.10 | 72.45 | 624.30 | XGBoost (log scran) | v1.6.2 | 2016 | |
| 6 | 0.80 | 0.48 | 0.77 | 7.50 | 59.68 | 573.40 | Logistic regression (log scran) | v1.1.2 | 2013 | |
| 12 | 0.04 | 0.03 | 0.08 | 4.60 | 55.38 | 1,455.80 | scArches+scANVI (Seurat v3 2000 HVG) | v0.17.1 | 2021 | |
| 10 | 0.24 | 0.17 | 0.27 | 4.40 | 95.98 | 1,336.50 | scANVI (Seurat v3 2000 HVG) | v0.17.1 | 2021 | |
| 11 | 0.20 | 0.08 | 0.25 | 12.50 | 183.17 | 753.20 | scArches+scANVI (All genes) | v0.17.2 | 2021 | |
| 9 | 0.66 | 0.20 | 0.70 | 11.50 | 201.22 | 1,618.70 | scANVI (All genes) | v0.17.2 | 2021 |