CeNGEN (split by batch)
Raw
Scaled
Rank | Name | Mean score | Accuracy | Accuracy | F1 score | F1 score | Macro F1 score | Macro F1 score | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Logistic regression (log CP10k) | 0.76 | 0.88 | 0.88 | 0.87 | 0.87 | 0.53 | 0.52 | 1.80 | 17.88 | 1,402.20 | 2013 | v1.1.3 | |
2 | Multilayer perceptron (log scran) | 0.74 | 0.87 | 0.86 | 0.87 | 0.86 | 0.49 | 0.49 | 6.80 | 41.85 | 1,580.00 | 1990 | v1.1.3 | |
3 | Seurat reference mapping (SCTransform) | 0.72 | 0.85 | 0.85 | 0.84 | 0.84 | 0.48 | 0.48 | 856.40 | 33.12 | 119.10 | 2021 | v4.3.0 | |
4 | XGBoost (log scran) | 0.71 | 0.83 | 0.83 | 0.84 | 0.84 | 0.47 | 0.47 | 6.80 | 53.43 | 1,068.40 | 2016 | v1.6.2 | |
5 | XGBoost (log CP10k) | 0.71 | 0.83 | 0.83 | 0.83 | 0.83 | 0.46 | 0.46 | 1.90 | 14.43 | 2,167.50 | 2016 | v1.6.2 | |
6 | K-neighbors classifier (log CP10k) | 0.69 | 0.82 | 0.82 | 0.84 | 0.83 | 0.42 | 0.42 | 2.60 | 2.30 | 292.30 | 1967 | v1.1.3 | |
7 | Logistic regression (log scran) | 0.68 | 0.77 | 0.77 | 0.80 | 0.80 | 0.48 | 0.47 | 6.80 | 52.22 | 603.40 | 2013 | v1.1.3 | |
8 | Multilayer perceptron (log CP10k) | 0.68 | 0.83 | 0.83 | 0.84 | 0.83 | 0.37 | 0.37 | 1.60 | 89.72 | 3,727.50 | 1990 | v1.1.3 | |
9 | K-neighbors classifier (log scran) | 0.64 | 0.78 | 0.78 | 0.80 | 0.80 | 0.34 | 0.34 | 6.80 | 39.62 | 106.40 | 1967 | v1.1.3 | |
10 | scANVI (All genes) | 0.48 | 0.65 | 0.64 | 0.62 | 0.61 | 0.20 | 0.20 | 11.60 | 166.77 | 2,504.50 | 2021 | v0.20.0 | |
11 | scANVI (Seurat v3 2000 HVG) | 0.22 | 0.27 | 0.26 | 0.23 | 0.21 | 0.18 | 0.18 | 20.50 | 177.30 | 1,772.90 | 2021 | v0.20.0 | |
12 | scArches+scANVI (All genes) | 0.17 | 0.25 | 0.24 | 0.20 | 0.18 | 0.09 | 0.09 | 15.70 | 118.40 | 2,769.00 | 2021 | v0.20.0 | |
13 | scArches+scANVI (Seurat v3 2000 HVG) | 0.04 | 0.08 | 0.07 | 0.04 | 0.02 | 0.04 | 0.04 | 17.90 | 68.90 | 2,431.20 | 2021 | v0.20.0 | |
14 | Majority Vote | -0.00 | 0.02 | 0.01 | 0.00 | -0.02 | 0.00 | -0.00 | 0.99 | 0.80 | 21.20 | 2022 | v0.7.0 |