CeNGEN (by batch)

100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch.

CeNGEN (by batch)

RankF1 scoreMacro F1 scoreAccuracyMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
140.000.000.021.001.6810.60Majority Vote

v0.6.0

2022
130.020.000.011.000.7225.50Random Labels

v0.6.0

2022
80.790.330.752.601.92285.70K-neighbors classifier (log CPM)

v1.1.2

1967
40.840.470.831.9016.522,234.40XGBoost (log CPM)

v1.6.2

2016
50.830.350.831.6037.43677.00Multilayer perceptron (log CPM)

v1.1.2

1990
10.870.520.881.8055.431,047.30Logistic regression (log CPM)

v1.1.2

2013
70.800.340.797.5030.58105.10K-neighbors classifier (log scran)

v1.1.2

1967
20.870.490.877.5043.201,073.00Multilayer perceptron (log scran)

v1.1.2

1990
30.840.470.837.1072.45624.30XGBoost (log scran)

v1.6.2

2016
60.800.480.777.5059.68573.40Logistic regression (log scran)

v1.1.2

2013
120.040.030.084.6055.381,455.80scArches+scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
100.240.170.274.4095.981,336.50scANVI (Seurat v3 2000 HVG)

v0.17.1

2021
110.200.080.2512.50183.17753.20scArches+scANVI (All genes)

v0.17.2

2021
90.660.200.7011.50201.221,618.70scANVI (All genes)

v0.17.2

2021