Mouse myeloid lineage differentiation

Myeloid lineage differentiation from mouse blood. Sequenced by SMARTseq in 2016 by Olsson et al.

Mouse myeloid lineage differentiation

Rankroot mean squared errorlocal propertyco-KNN AUCtrustworthinesslocal continuity meta criterionglobal propertyco-KNN sizedensity preservationcontinuityMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
526.160.350.780.870.330.820.380.600.931.100.4168.90Principle Component Analysis (PCA) (logCPM, 1kHVG)

v1.1.2

1901
456.440.390.710.880.350.740.40-0.320.901.102.6736.50Uniform Manifold Approximation and Projection (UMAP), as implemented by scanpy (logCPM, 1kHVG)

v0.5.3

2018
101,199.800.310.560.960.290.580.33-0.410.711.401.02236.10PHATE (default)

v1.0.8

2019
656.820.370.640.890.340.670.380.560.901.201.5278.10densMAP PCA (logCPM, 1kHVG)

v0.5.3

2021
854.680.320.620.820.250.660.300.840.931.201.6860.20densMAP (logCPM, 1kHVG)

v0.5.3

2021
270.180.620.700.890.580.700.620.820.951.102.62158.10PHATE (logCPM, 1kHVG)

v1.0.8

2019
91,199.780.310.580.950.290.610.34-0.240.811.403.92180.20PHATE (gamma=0)

v1.0.8

2019
337.410.410.700.890.380.730.430.090.911.105.82226.30“t-Distributed Stochastic Neighbor Embedding (t-SNE) (logCPM, 1kHVG)

v0.1

2008
166.920.660.850.850.640.870.680.750.991.1016.13373.90NeuralEE (CPU) (logCPM, 1kHVG)

v0.1.6

2020
724,002.850.330.580.960.320.600.370.060.842.604.971,065.90NeuralEE (CPU) (Default)

v0.1.6

2020