Mouse myeloid lineage differentiation

Myeloid lineage differentiation from mouse blood. Sequenced by SMARTseq in 2016 by Olsson et al.

Rank	root mean squared error	local property	co-KNN AUC	trustworthiness	local continuity meta criterion	global property	co-KNN size	density preservation	continuity	Memory (GB)	Runtime (min)	CPU (%)	Name	Code	Year
5	26.16	0.35	0.78	0.87	0.33	0.82	0.38	0.60	0.93	1.10	0.41	68.90	Principle Component Analysis (PCA) (logCPM, 1kHVG)	v1.1.2	1901
4	56.44	0.39	0.71	0.88	0.35	0.74	0.40	-0.32	0.90	1.10	2.67	36.50	Uniform Manifold Approximation and Projection (UMAP), as implemented by scanpy (logCPM, 1kHVG)	v0.5.3	2018
10	1,199.80	0.31	0.56	0.96	0.29	0.58	0.33	-0.41	0.71	1.40	1.02	236.10	PHATE (default)	v1.0.8	2019
6	56.82	0.37	0.64	0.89	0.34	0.67	0.38	0.56	0.90	1.20	1.52	78.10	densMAP PCA (logCPM, 1kHVG)	v0.5.3	2021
8	54.68	0.32	0.62	0.82	0.25	0.66	0.30	0.84	0.93	1.20	1.68	60.20	densMAP (logCPM, 1kHVG)	v0.5.3	2021
2	70.18	0.62	0.70	0.89	0.58	0.70	0.62	0.82	0.95	1.10	2.62	158.10	PHATE (logCPM, 1kHVG)	v1.0.8	2019
9	1,199.78	0.31	0.58	0.95	0.29	0.61	0.34	-0.24	0.81	1.40	3.92	180.20	PHATE (gamma=0)	v1.0.8	2019
3	37.41	0.41	0.70	0.89	0.38	0.73	0.43	0.09	0.91	1.10	5.82	226.30	“t-Distributed Stochastic Neighbor Embedding (t-SNE) (logCPM, 1kHVG)	v0.1	2008
1	66.92	0.66	0.85	0.85	0.64	0.87	0.68	0.75	0.99	1.10	16.13	373.90	NeuralEE (CPU) (logCPM, 1kHVG)	v0.1.6	2020
7	24,002.85	0.33	0.58	0.96	0.32	0.60	0.37	0.06	0.84	2.60	4.97	1,065.90	NeuralEE (CPU) (Default)	v0.1.6	2020