Tabula Muris Senis Lung

All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Here we use just 10x data from lung. 24540 cells × 16160 genes across 3 time points.

Raw Scaled

Rank	Name	Mean score	Mean-squared error	Mean-squared error	Poisson loss	Poisson loss	Memory (GB)	Runtime (min)	CPU (%)	Year	Library
1	MAGIC (approximate, reversed normalization)	0.64	0.18	0.30	0.03	0.98	7.80	7.40	137.80	2018	v3.0.0
2	MAGIC (reversed normalization)	0.64	0.18	0.30	0.03	0.98	8.20	12.90	111.70	2018	v3.0.0
3	ALRA (sqrt norm)	0.47	0.27	-0.04	0.03	0.98	39.30	38.05	100.90	2018	v1.0.0
4	MAGIC (approximate)	0.40	0.18	0.30	0.12	0.50	2.60	10.13	121.80	2018	v3.0.0
5	MAGIC	0.40	0.18	0.30	0.12	0.50	8.20	8.52	126.80	2018	v3.0.0
6	DCA	0.07	0.22	0.18	0.21	-0.04	6.90	15.88	1,750.00	2019	v0.3.4
7	KNN smoothing	0.05	0.23	0.13	0.21	-0.03	8.20	7.00	128.20	2022	v3.0.0
8	ALRA (log norm)	-0.12	0.28	-0.07	0.24	-0.17	46.70	27.28	101.00	2018	v1.0.0
9	Iterative KNN smoothing	-4.73	0.23	0.14	1.93	-9.60	28.10	9.47	477.80	2018	v2.0