1k Peripheral blood mononuclear cells

1k Peripheral Blood Mononuclear Cells (PBMCs) from a healthy donor. Sequenced on 10X v3 chemistry in November 2018 by 10X Genomics.
Raw Scaled
RankNameMean scoreMean-squared errorMean-squared errorPoisson lossPoisson lossMemory (GB)Runtime (min)CPU (%)PaperYearLibrary
1MAGIC (approximate, reversed normalization)0.640.190.300.050.980.431.03256.202018v3.0.0
2MAGIC (reversed normalization)0.640.190.300.050.980.721.17229.302018v3.0.0
3ALRA (sqrt norm)0.500.260.030.050.982.101.8882.502018v1.0.0
4MAGIC (approximate)0.420.190.300.160.540.430.82267.702018v3.0.0
5MAGIC0.420.190.300.160.540.440.75288.802018v3.0.0
6DCA0.080.220.200.31-0.042.701.85451.202019v0.3.4
7KNN smoothing0.070.230.160.31-0.030.710.55229.502022v3.0.0
8ALRA (log norm)-0.270.28-0.040.43-0.492.101.6289.202018v1.0.0
9Iterative KNN smoothing-4.600.220.172.72-9.381.100.47503.202018v2.0