Pancreas (inDrop)

Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Here we just use the inDrop1 batch, which includes1937 cells × 15502 genes.
Raw Scaled
RankNameMean scoreMean-squared errorMean-squared errorPoisson lossPoisson lossMemory (GB)Runtime (min)CPU (%)PaperYearLibrary
1MAGIC (reversed normalization)0.610.230.240.040.980.541.13235.202018v3.0.0
2MAGIC (approximate, reversed normalization)0.610.230.240.040.980.540.78483.802018v3.0.0
3ALRA (sqrt norm)0.480.31-0.010.040.983.402.0398.302018v1.0.0
4MAGIC (approximate)0.420.230.240.120.590.781.25214.402018v3.0.0
5MAGIC0.410.230.240.120.590.540.31635.202018v3.0.0
6DCA0.020.270.120.27-0.073.403.43483.502019v0.3.4
7KNN smoothing0.000.280.080.28-0.080.530.44637.502022v3.0.0
8ALRA (log norm)-0.130.33-0.090.30-0.173.702.20101.002018v1.0.0
9Iterative KNN smoothing-5.100.280.092.58-10.301.800.56922.502018v2.0