Mouse brain atlas

A murine brain atlas with adjacent cell types as assumed benchmark truth, inferred from deconvolution proportion correlations using matching 10x Visium slides (see Dimitrov et al., 2022). 14249 cells x 34617 features with 23 cell type labels.

Mouse brain atlas

RankMean scorePrecision-recall AUCOdds RatioMemory (GB)Runtime (min)CPU (%)NamePaperYearLibrary
10.300.010.60122.80158.60100.50CellPhoneDB (max)2020v0.1.7
20.250.010.5020.6015.8594.40SingleCellSignalR (max)2021v0.1.7
30.210.040.3820.4011.3094.30Log2FC (sum)2022v0.1.7
40.190.010.3820.4031.88101.20NATMI (max)2021v0.1.7
50.190.000.3820.7013.6794.00Log2FC (max)2022v0.1.7
60.18-0.020.3820.5015.5394.70Connectome (sum)2022v0.1.7
70.10-0.010.22120.40180.37100.20LIANA Rank Aggregate (max)2022v0.1.7
80.10-0.020.2220.4019.97101.20NATMI (sum)2021v0.1.7
9-0.17-0.02-0.3120.4013.6894.20Connectome (max)2022v0.1.7
10-0.18-0.05-0.31112.20164.07100.50LIANA Rank Aggregate (sum)2022v0.1.7
11-0.42-0.05-0.79119.00142.8799.80CellPhoneDB (sum)2020v0.1.7
12-0.42-0.05-0.7920.2015.8292.90SingleCellSignalR (sum)2021v0.1.7