Triple negative breast cancer atlas

Human breast cancer atlas (Wu et al., 2021), with cytokine activities, inferred using a multivariate linear model with cytokine-focused signatures, as assumed true cell-cell communication (Dimitrov et al., 2022). 42512 cells x 28078 features with 29 cell types from 10 patients

Triple negative breast cancer atlas

RankMean scorePrecision-recall AUCOdds RatioMemory (GB)Runtime (min)CPU (%)NamePaperYearLibrary
1-0.050.00-0.1195.00127.38100.50LIANA Rank Aggregate (sum)2022v0.1.7
2-0.06-0.02-0.1121.0034.37100.40NATMI (max)2021v0.1.7
3-0.070.02-0.1620.6012.4399.40SingleCellSignalR (max)2021v0.1.7
4-0.080.01-0.1695.20107.4899.90CellPhoneDB (sum)2020v0.1.7
5-0.090.00-0.1820.6015.4088.40Connectome (max)2022v0.1.7
6-0.100.01-0.2020.6016.4085.20Log2FC (max)2022v0.1.7
7-0.100.01-0.2220.6012.4895.60Connectome (sum)2022v0.1.7
8-0.110.00-0.2220.609.4595.90Log2FC (sum)2022v0.1.7
9-0.110.01-0.2395.00148.30100.30LIANA Rank Aggregate (max)2022v0.1.7
10-0.12-0.00-0.2320.609.3396.40SingleCellSignalR (sum)2021v0.1.7
11-0.12-0.01-0.2321.0022.9296.30NATMI (sum)2021v0.1.7
12-0.130.02-0.2795.20108.8099.90CellPhoneDB (max)2020v0.1.7