Pancreas (by batch)
Raw
Scaled
Rank | Name | Mean score | ARI | ARI | Graph connectivity | Graph connectivity | Isolated label F1 | Isolated label F1 | NMI | NMI | Memory (GB) | Runtime (min) | CPU (%) | Paper | Year | Library |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Scanorama (hvg/unscaled) | 0.96 | 0.96 | 0.96 | 1.00 | 0.99 | 0.95 | 0.95 | 0.93 | 0.93 | 3.80 | 2.40 | 538.90 | 2019 | v1.7 | |
2 | scANVI (hvg/unscaled) | 0.96 | 0.95 | 0.95 | 1.00 | 1.00 | 0.95 | 0.95 | 0.92 | 0.92 | 3.50 | 44.08 | 1,108.20 | 2021 | v0.20.0 | |
3 | Scanorama (hvg/scaled) | 0.95 | 0.95 | 0.95 | 0.99 | 0.99 | 0.95 | 0.95 | 0.92 | 0.92 | 5.10 | 7.08 | 441.20 | 2019 | v1.7 | |
4 | Combat (hvg/scaled) | 0.95 | 0.95 | 0.95 | 1.00 | 0.99 | 0.96 | 0.96 | 0.92 | 0.92 | 3.80 | 5.77 | 341.80 | 2007 | v1.9.1 | |
5 | scANVI (full/unscaled) | 0.95 | 0.95 | 0.95 | 1.00 | 1.00 | 0.95 | 0.94 | 0.92 | 0.92 | 4.90 | 116.77 | 2,042.40 | 2021 | v0.20.0 | |
6 | MNN (hvg/scaled) | 0.95 | 0.94 | 0.94 | 0.99 | 0.99 | 0.96 | 0.95 | 0.91 | 0.91 | 80.10 | 13.25 | 479.60 | 2018 | v0.1.9.5 | |
7 | scVI (hvg/unscaled) | 0.95 | 0.95 | 0.95 | 0.99 | 0.99 | 0.95 | 0.95 | 0.92 | 0.91 | 2.30 | 45.02 | 565.70 | 2018 | v0.20.0 | |
8 | scVI (full/unscaled) | 0.95 | 0.94 | 0.94 | 1.00 | 1.00 | 0.94 | 0.94 | 0.91 | 0.91 | 3.90 | 53.73 | 2,636.50 | 2018 | v0.20.0 | |
9 | Harmony (hvg/unscaled) | 0.94 | 0.94 | 0.94 | 0.99 | 0.99 | 0.93 | 0.93 | 0.92 | 0.92 | 2.10 | 1.63 | 351.60 | 2019 | v0.1.7 | |
10 | Combat (hvg/unscaled) | 0.94 | 0.94 | 0.94 | 1.00 | 0.99 | 0.93 | 0.92 | 0.91 | 0.91 | 3.20 | 6.25 | 205.20 | 2007 | v1.9.1 | |
11 | Combat (full/unscaled) | 0.94 | 0.95 | 0.95 | 0.99 | 0.99 | 0.89 | 0.89 | 0.92 | 0.92 | 13.80 | 3.07 | 561.90 | 2007 | v1.9.1 | |
12 | BBKNN (hvg/scaled) | 0.93 | 0.92 | 0.92 | 1.00 | 1.00 | 0.95 | 0.94 | 0.86 | 0.86 | 2.40 | 1.30 | 346.60 | 2020 | v1.5.1 | |
13 | Scanorama (full/scaled) | 0.93 | 0.91 | 0.91 | 0.99 | 0.99 | 0.96 | 0.95 | 0.87 | 0.87 | 30.80 | 15.25 | 878.20 | 2019 | v1.7 | |
14 | BBKNN (hvg/unscaled) | 0.92 | 0.95 | 0.95 | 1.00 | 1.00 | 0.85 | 0.84 | 0.90 | 0.90 | 2.00 | 3.20 | 455.00 | 2020 | v1.5.1 | |
15 | MNN (hvg/unscaled) | 0.91 | 0.85 | 0.85 | 1.00 | 0.99 | 0.93 | 0.93 | 0.88 | 0.88 | 35.80 | 5.40 | 1,169.80 | 2018 | v0.1.9.5 | |
16 | SCALEX (hvg) | 0.91 | 0.94 | 0.94 | 0.99 | 0.99 | 0.81 | 0.80 | 0.91 | 0.91 | 19.90 | 25.03 | 556.50 | 2022 | v1.0.2 | |
17 | Harmony (full/unscaled) | 0.90 | 0.91 | 0.91 | 0.99 | 0.99 | 0.84 | 0.83 | 0.87 | 0.87 | 2.50 | 6.30 | 283.60 | 2019 | v0.1.7 | |
18 | BBKNN (full/unscaled) | 0.90 | 0.91 | 0.91 | 1.00 | 0.99 | 0.85 | 0.84 | 0.86 | 0.86 | 2.90 | 6.40 | 218.10 | 2020 | v1.5.1 | |
19 | FastMNN feature (hvg/scaled) | 0.90 | 0.93 | 0.93 | 0.95 | 0.94 | 0.86 | 0.84 | 0.88 | 0.88 | 5.40 | 6.58 | 124.30 | 2019 | v1.14.1 | |
20 | MNN (full/unscaled) | 0.89 | 0.84 | 0.84 | 0.99 | 0.99 | 0.89 | 0.88 | 0.87 | 0.87 | 145.50 | 33.13 | 1,549.80 | 2018 | v0.1.9.5 | |
21 | Harmony (hvg/scaled) | 0.89 | 0.91 | 0.91 | 0.99 | 0.98 | 0.82 | 0.80 | 0.87 | 0.87 | 2.40 | 25.70 | 336.90 | 2019 | v0.1.7 | |
22 | BBKNN (full/scaled) | 0.89 | 0.83 | 0.83 | 1.00 | 0.99 | 0.96 | 0.95 | 0.78 | 0.78 | 7.50 | 5.05 | 254.40 | 2020 | v1.5.1 | |
23 | Scanorama gene output (hvg/scaled) | 0.89 | 0.77 | 0.77 | 0.99 | 0.99 | 0.95 | 0.95 | 0.84 | 0.84 | 5.40 | 4.07 | 716.70 | 2019 | v1.7 | |
24 | Harmony (full/scaled) | 0.88 | 0.83 | 0.83 | 0.99 | 0.98 | 0.92 | 0.92 | 0.81 | 0.81 | 7.50 | 11.83 | 509.50 | 2019 | v0.1.7 | |
25 | FastMNN embed (hvg/unscaled) | 0.87 | 0.84 | 0.84 | 0.95 | 0.94 | 0.86 | 0.84 | 0.84 | 0.84 | 3.00 | 3.33 | 94.10 | 2019 | v1.14.1 | |
26 | SCALEX (full) | 0.86 | 0.92 | 0.92 | 0.99 | 0.99 | 0.71 | 0.69 | 0.86 | 0.86 | 29.60 | 58.40 | 2,483.40 | 2022 | v1.0.2 | |
27 | FastMNN embed (full/scaled) | 0.86 | 0.88 | 0.88 | 0.96 | 0.95 | 0.81 | 0.79 | 0.83 | 0.83 | 10.40 | 10.17 | 99.10 | 2019 | v1.14.1 | |
28 | FastMNN embed (hvg/scaled) | 0.85 | 0.79 | 0.79 | 0.95 | 0.94 | 0.86 | 0.85 | 0.83 | 0.83 | 3.30 | 4.38 | 76.20 | 2019 | v1.14.1 | |
29 | FastMNN embed (full/unscaled) | 0.85 | 0.88 | 0.88 | 0.96 | 0.95 | 0.76 | 0.74 | 0.83 | 0.83 | 6.50 | 7.30 | 84.60 | 2019 | v1.14.1 | |
30 | FastMNN feature (hvg/unscaled) | 0.85 | 0.79 | 0.79 | 0.95 | 0.94 | 0.85 | 0.84 | 0.83 | 0.83 | 5.30 | 6.27 | 133.40 | 2019 | v1.14.1 | |
31 | Scanorama gene output (hvg/unscaled) | 0.85 | 0.66 | 0.66 | 0.99 | 0.98 | 0.92 | 0.92 | 0.83 | 0.83 | 4.70 | 9.70 | 413.20 | 2019 | v1.7 | |
32 | FastMNN feature (full/unscaled) | 0.84 | 0.89 | 0.89 | 0.96 | 0.95 | 0.71 | 0.69 | 0.84 | 0.84 | 18.00 | 7.25 | 120.30 | 2019 | v1.14.1 | |
33 | FastMNN feature (full/scaled) | 0.83 | 0.87 | 0.87 | 0.96 | 0.95 | 0.72 | 0.70 | 0.82 | 0.82 | 22.50 | 12.38 | 209.90 | 2019 | v1.14.1 | |
34 | Scanorama gene output (full/scaled) | 0.82 | 0.65 | 0.65 | 0.98 | 0.97 | 0.92 | 0.92 | 0.75 | 0.75 | 30.70 | 23.97 | 369.00 | 2019 | v1.7 | |
35 | Scanorama (full/unscaled) | 0.80 | 0.60 | 0.60 | 0.99 | 0.99 | 0.86 | 0.85 | 0.78 | 0.78 | 27.70 | 10.25 | 1,249.20 | 2019 | v1.7 | |
36 | Scanorama gene output (full/unscaled) | 0.79 | 0.61 | 0.61 | 0.99 | 0.99 | 0.80 | 0.79 | 0.76 | 0.76 | 27.70 | 6.80 | 1,478.00 | 2019 | v1.7 | |
37 | MNN (full/scaled) | 0.68 | 0.52 | 0.52 | 0.98 | 0.98 | 0.70 | 0.68 | 0.54 | 0.54 | 501.50 | 54.82 | 1,253.60 | 2018 | v0.1.9.5 | |
38 | Combat (full/scaled) | 0.63 | 0.39 | 0.39 | 0.94 | 0.93 | 0.75 | 0.73 | 0.47 | 0.47 | 15.80 | 10.27 | 340.80 | 2007 | v1.9.1 | |
39 | Liger (hvg/unscaled) | 0.51 | 0.38 | 0.38 | 0.75 | 0.69 | 0.64 | 0.61 | 0.38 | 0.38 | 3.70 | 37.12 | 101.00 | 2019 | v0.5.0.9000 | |
40 | Liger (full/unscaled) | 0.50 | 0.37 | 0.36 | 0.77 | 0.71 | 0.61 | 0.58 | 0.36 | 0.36 | 13.50 | 174.90 | 100.50 | 2019 | v0.5.0.9000 |