Pancreas (by batch)

Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq).

Pancreas (by batch)

Rank	NMI	Isolated label F1	ARI	Graph connectivity	Memory (GB)	Runtime (min)	CPU (%)	Name	Code	Year
38	0.54	0.01	0.25	0.64	5.00	3.93	277.10	Harmony (full/unscaled)	v0.1.7	2019
15	0.82	0.04	0.88	0.91	7.00	3.40	81.30	FastMNN embed (hvg/unscaled)	v1.12.3	2019
4	0.88	0.25	0.92	0.99	6.00	3.60	413.70	Combat (hvg/scaled)	v1.9.1	2007
36	0.61	0.01	0.49	0.70	5.90	3.50	303.60	Combat (hvg/unscaled)	v1.9.1	2007
23	0.68	0.01	0.62	0.99	5.10	1.50	224.80	BBKNN (hvg/scaled)	v1.5.1	2020
37	0.54	0.01	0.23	0.64	4.60	1.97	228.10	Harmony (hvg/unscaled)	v0.1.7	2019
26	0.78	0.01	0.86	0.90	6.60	3.65	633.40	Scanorama (hvg/unscaled)	v1.7.2	2019
13	0.82	0.04	0.88	0.91	7.50	3.17	81.90	FastMNN embed (hvg/scaled)	v1.12.3	2019
7	0.86	0.07	0.90	0.99	153.40	7.93	907.40	MNN (hvg/scaled)	v0.1.9.5	2018
25	0.77	0.03	0.85	0.80	6.50	4.58	705.80	Scanorama gene output (hvg/unscaled)	v1.7.2	2019
17	0.69	0.13	0.50	0.93	11.80	1.55	354.00	Harmony (full/scaled)	v0.1.7	2019
22	0.61	0.08	0.44	0.95	11.80	1.98	662.80	BBKNN (full/scaled)	v1.5.1	2020
9	0.79	0.27	0.82	0.96	5.10	8.85	546.00	Harmony (hvg/scaled)	v0.1.7	2019
8	0.85	0.08	0.89	0.95	7.60	4.65	736.30	Scanorama gene output (hvg/scaled)	v1.7.2	2019
5	0.88	0.14	0.92	0.98	7.90	6.18	1,102.50	Scanorama (hvg/scaled)	v1.7.2	2019
27	0.73	0.02	0.54	0.91	150.10	6.48	713.10	MNN (hvg/unscaled)	v0.1.9.5	2018
31	0.66	0.02	0.50	0.83	4.70	1.65	150.20	BBKNN (hvg/unscaled)	v1.5.1	2020
12	0.82	0.04	0.88	0.91	8.70	3.02	206.80	FastMNN feature (hvg/unscaled)	v1.12.3	2019
32	0.66	0.02	0.49	0.83	7.20	1.35	616.70	BBKNN (full/unscaled)	v1.5.1	2020
10	0.83	0.04	0.88	0.91	8.90	4.38	234.50	FastMNN feature (hvg/scaled)	v1.12.3	2019
30	0.34	0.09	0.21	0.86	21.00	4.03	648.80	Combat (full/scaled)	v1.9.1	2007
35	0.35	0.06	0.35	0.61	6.90	31.27	97.20	Liger (hvg/unscaled)	v0.5.0.9000	2019
34	0.61	0.01	0.51	0.67	17.50	3.60	398.40	Combat (full/unscaled)	v1.9.1	2007
16	0.76	0.33	0.82	0.87	23.20	10.60	876.00	Scanorama (full/unscaled)	v1.7.2	2019
18	0.78	0.09	0.87	0.84	23.20	9.92	925.30	Scanorama gene output (full/unscaled)	v1.7.2	2019
19	0.82	0.02	0.88	0.91	27.80	17.32	96.70	FastMNN embed (full/scaled)	v1.12.3	2019
28	0.60	0.03	0.43	0.93	36.50	10.77	915.10	Scanorama gene output (full/scaled)	v1.7.2	2019
21	0.80	0.02	0.86	0.91	27.00	14.57	145.00	FastMNN feature (full/unscaled)	v1.12.3	2019
11	0.76	0.12	0.77	0.98	38.70	12.85	1,266.80	Scanorama (full/scaled)	v1.7.2	2019
14	0.82	0.03	0.87	0.92	20.90	11.00	100.50	FastMNN embed (full/unscaled)	v1.12.3	2019
6	0.90	0.10	0.94	0.98	7.90	108.82	1,420.00	scVI (full/unscaled)	v0.17.1	2018
20	0.80	0.02	0.86	0.92	34.00	19.02	160.30	FastMNN feature (full/scaled)	v1.12.3	2019
24	0.76	0.03	0.71	0.91	350.10	34.43	1,114.10	MNN (full/unscaled)	v0.1.9.5	2018
1	0.92	0.18	0.95	0.99	6.30	126.28	1,020.70	scANVI (hvg/unscaled)	v0.17.1	2021
2	0.91	0.09	0.95	1.00	5.70	23.32	1,378.90	scVI (hvg/unscaled)	v0.17.2	2018
33	0.34	0.08	0.37	0.65	20.70	243.85	99.90	Liger (full/unscaled)	v0.5.0.9000	2019
29	0.46	0.08	0.30	0.89	475.50	34.90	1,757.30	MNN (full/scaled)	v0.1.9.5	2018
3	0.91	0.10	0.95	0.98	9.60	81.90	1,597.00	scANVI (full/unscaled)	v0.17.2	2021