Immune (by batch)

Human immune cells from peripheral blood and bone marrow taken from 5 datasets comprising 10 batches across technologies (10X, Smart-seq2).

Immune (by batch)

RankNMIIsolated label F1ARIGraph connectivityMemory (GB)Runtime (min)CPU (%)NamePaperCodeYear
360.560.540.400.855.502.55637.50Harmony (full/unscaled)

v0.1.7

2019
350.530.580.420.855.202.95312.00Harmony (hvg/unscaled)

v0.1.7

2019
300.600.720.420.957.804.00318.40Combat (hvg/unscaled)

v1.9.1

2007
290.650.470.580.926.102.60466.10Harmony (hvg/scaled)

v0.1.7

2019
370.430.330.250.945.302.02281.20BBKNN (hvg/unscaled)

v1.5.1

2020
310.560.270.430.986.102.22235.00BBKNN (hvg/scaled)

v1.5.1

2020
90.680.790.490.978.703.48431.70Combat (hvg/scaled)

v1.9.1

2007
250.600.500.530.9613.502.75960.00Harmony (full/scaled)

v0.1.7

2019
340.530.310.310.9813.502.181,471.80BBKNN (full/scaled)

v1.5.1

2020
380.470.320.270.918.901.631,550.10BBKNN (full/unscaled)

v1.5.1

2020
220.660.680.490.9512.204.68249.10FastMNN feature (hvg/unscaled)

v1.12.3

2019
60.760.750.720.9712.006.43922.60Scanorama (hvg/scaled)

v1.7.2

2019
80.690.820.620.9412.005.681,087.70Scanorama gene output (hvg/scaled)

v1.7.2

2019
160.660.680.490.9512.405.47388.10FastMNN feature (hvg/scaled)

v1.12.3

2019
330.610.560.440.9521.105.48295.20Combat (full/unscaled)

v1.9.1

2007
170.660.680.500.959.003.83103.80FastMNN embed (hvg/scaled)

v1.12.3

2019
210.620.710.470.9624.706.57548.40Combat (full/scaled)

v1.9.1

2007
190.660.670.490.959.005.92100.20FastMNN embed (hvg/unscaled)

v1.12.3

2019
230.670.600.500.9511.505.23912.70Scanorama (hvg/unscaled)

v1.7.2

2019
120.670.600.520.9511.506.03873.80Scanorama gene output (hvg/unscaled)

v1.7.2

2019
200.670.660.490.9527.1013.32105.60FastMNN embed (full/scaled)

v1.12.3

2019
40.790.770.760.9872.3032.98573.50MNN (hvg/scaled)

v0.1.9.5

2018
130.670.680.500.9523.6011.55103.90FastMNN embed (full/unscaled)

v1.12.3

2019
180.700.580.570.888.6058.20103.50Liger (hvg/unscaled)

v0.5.0.9000

2019
70.760.690.700.9744.3023.401,471.00Scanorama (full/scaled)

v1.7.2

2019
100.680.630.530.9641.2015.631,861.10Scanorama (full/unscaled)

v1.7.2

2019
140.660.850.540.9044.2030.87967.30Scanorama gene output (full/scaled)

v1.7.2

2019
110.670.620.570.9641.1020.801,219.20Scanorama gene output (full/unscaled)

v1.7.2

2019
280.630.650.510.9236.8024.08163.30FastMNN feature (full/scaled)

v1.12.3

2019
270.670.560.490.94679.1063.572,228.40MNN (full/unscaled)

v0.1.9.5

2018
50.810.690.820.987.90153.871,272.50scVI (full/unscaled)

v0.17.1

2018
150.650.760.560.9433.4018.03181.70FastMNN feature (full/unscaled)

v1.12.3

2019
30.820.760.840.996.30178.93896.40scVI (hvg/unscaled)

v0.17.1

2018
10.850.860.890.997.60175.10908.10scANVI (hvg/unscaled)

v0.17.1

2021
260.670.530.510.94134.1012.321,404.10MNN (hvg/unscaled)

v0.1.9.5

2018
320.660.490.510.8922.10207.38100.60Liger (full/unscaled)

v0.5.0.9000

2019
240.650.740.490.95514.2071.652,155.30MNN (full/scaled)

v0.1.9.5

2018
20.830.820.870.9810.0087.231,586.80scANVI (full/unscaled)

v0.17.2

2021