Immune (by batch)

Human immune cells from peripheral blood and bone marrow taken from 5 datasets comprising 10 batches across technologies (10X, Smart-seq2).

Immune (by batch)

RankMean scoreHVG conservationMemory (GB)Runtime (min)CPU (%)NamePaperYearLibrary
10.430.4318.6037.751,787.50SCALEX (hvg)2022v1.0.2
20.360.3650.0015.471,289.20MNN (hvg/unscaled)2018v0.1.9.5
30.360.364.804.07485.80Combat (hvg/unscaled)2007v1.9.1
40.230.2323.7042.651,465.80SCALEX (full)2022v1.0.2
50.220.229.503.75303.80FastMNN feature (hvg/scaled)2019v1.12.3
60.220.228.104.85188.80FastMNN feature (hvg/unscaled)2019v1.12.3
70.220.22372.5048.624,298.50MNN (full/unscaled)2018v0.1.9.5
80.220.2241.6022.901,059.80MNN (hvg/scaled)2018v0.1.9.5
90.170.178.807.47587.80Scanorama gene output (hvg/scaled)2019v1.7
100.170.175.902.65632.70Combat (hvg/scaled)2007v1.9.1
110.160.167.805.80727.70Scanorama gene output (hvg/unscaled)2019v1.7
120.100.1017.609.65381.50Combat (full/unscaled)2007v1.9.1
130.070.0730.6015.25185.50FastMNN feature (full/scaled)2019v1.12.3
140.070.0723.3011.00164.40FastMNN feature (full/unscaled)2019v1.12.3
15-0.05-0.05600.6066.323,214.10MNN (full/scaled)2018v0.1.9.5
16-0.06-0.0643.4034.521,233.00Scanorama gene output (full/scaled)2019v1.7
17-0.07-0.0718.2023.551,316.50Scanorama gene output (full/unscaled)2019v1.7
18-0.07-0.0722.005.371,560.60Combat (full/scaled)2007v1.9.1