Pancreas (by batch)

Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq).

Pancreas (by batch)

RankMean scorePC RegressionBatch ASWSilhouetteIsolated label SilhouetteCell Cycle ScoreMemory (GB)Runtime (min)CPU (%)NamePaperYearLibrary
11.17NaN0.610.413.671.183.702.35570.50Combat (hvg/scaled)2007v1.9.1
21.120.000.450.483.541.112.501.40478.00Harmony (hvg/scaled)2019v0.1.7
31.09NaN0.750.163.910.6518.7010.72387.10Combat (full/scaled)2007v1.9.1
40.970.000.520.313.230.817.601.63919.00Harmony (full/scaled)2019v0.1.7
50.891.000.740.411.111.1820.2021.582,224.40SCALEX (hvg)2022v1.0.2
60.760.800.630.371.250.746.5093.131,873.10scANVI (hvg/unscaled)2021v0.19.0
70.750.920.760.280.770.992.502.50711.10Harmony (full/unscaled)2019v0.1.7
80.730.820.630.311.220.675.6064.932,074.20scVI (hvg/unscaled)2018v0.19.0
90.721.000.620.300.750.9326.70116.482,278.00SCALEX (full)2022v1.0.2
100.720.910.630.260.950.853.80114.122,396.40scVI (full/unscaled)2018v0.19.0
110.720.890.570.300.970.855.8072.881,566.80scANVI (full/unscaled)2021v0.19.0
120.670.190.900.250.791.2226.9015.121,462.20Scanorama (full/unscaled)2019v1.7
130.660.510.900.080.751.07503.9049.151,552.30MNN (full/scaled)2018v0.1.9.5
140.660.740.750.420.141.232.1022.32446.10Harmony (hvg/unscaled)2019v0.1.7
150.620.470.920.310.440.9887.4035.121,362.00MNN (full/unscaled)2018v0.1.9.5
160.610.001.010.380.411.274.807.98493.10Scanorama (hvg/unscaled)2019v1.7
170.580.000.900.390.441.1583.508.93774.70MNN (hvg/unscaled)2018v0.1.9.5
180.550.000.160.450.941.214.702.82872.60Scanorama gene output (hvg/unscaled)2019v1.7
190.530.950.270.110.760.5712.00175.37100.40Liger (full/unscaled)2019v0.5.0.9000
200.520.350.970.240.031.0133.9018.271,042.30Scanorama (full/scaled)2019v1.7
210.510.640.930.32-0.080.7613.902.95623.80Combat (full/unscaled)2007v1.9.1
220.490.000.850.340.041.243.302.37553.40Combat (hvg/unscaled)2007v1.9.1
230.480.880.040.170.930.403.7024.52101.20Liger (hvg/unscaled)2019v0.5.0.9000
240.460.400.460.350.101.0026.808.08593.30Scanorama gene output (full/unscaled)2019v1.7
250.390.280.870.32-0.711.215.403.13538.20Scanorama (hvg/scaled)2019v1.7
260.370.870.200.59-0.270.456.603.20105.70FastMNN embed (full/unscaled)2019v1.12.3
270.340.700.070.63-0.610.912.901.53115.60FastMNN embed (hvg/unscaled)2019v1.12.3
280.330.100.140.29-0.031.1532.7023.781,234.10Scanorama gene output (full/scaled)2019v1.7
290.280.000.810.34-0.660.9359.406.671,016.10MNN (hvg/scaled)2018v0.1.9.5
300.280.00-0.130.42-0.061.155.003.27802.50Scanorama gene output (hvg/scaled)2019v1.7
310.140.000.070.63-0.610.623.303.5299.10FastMNN embed (hvg/scaled)2019v1.12.3
320.140.000.200.59-0.270.1712.806.78103.50FastMNN embed (full/scaled)2019v1.12.3