Immune (by batch)

Human immune cells from peripheral blood and bone marrow taken from 5 datasets comprising 10 batches across technologies (10X, Smart-seq2).

Immune (by batch)

RankMean scorePC RegressionBatch ASWSilhouetteIsolated label SilhouetteCell Cycle ScoreMemory (GB)Runtime (min)CPU (%)NamePaperYearLibrary
10.830.810.390.231.491.226.108.3588.70FastMNN embed (full/unscaled)2019v1.12.3
20.790.920.530.391.101.025.8083.451,507.50scANVI (full/unscaled)2021v0.19.0
30.771.000.460.300.921.1523.6072.971,260.50SCALEX (full)2022v1.0.2
40.750.940.550.311.070.903.4075.481,573.90scVI (full/unscaled)2018v0.19.0
50.740.920.520.390.980.894.5041.681,266.40scANVI (hvg/unscaled)2021v0.19.0
60.740.950.140.221.560.8215.30180.05100.40Liger (full/unscaled)2019v0.5.0.9000
70.731.000.520.330.741.0718.5018.151,373.20SCALEX (hvg)2022v1.0.2
80.710.930.270.311.270.795.0037.53101.70Liger (hvg/unscaled)2019v0.5.0.9000
90.710.150.770.311.191.158.2015.23580.60Scanorama (hvg/scaled)2019v1.7
100.710.930.560.300.870.873.3043.401,332.10scVI (hvg/unscaled)2018v0.19.0
110.690.250.730.291.430.7841.6022.90506.80Scanorama (full/scaled)2019v1.7
120.670.170.670.291.061.1619.3014.321,357.00Scanorama (full/unscaled)2019v1.7
130.650.940.370.250.700.982.402.88897.60Harmony (full/unscaled)2019v0.1.7
140.650.110.800.271.021.03598.9084.782,009.90MNN (full/scaled)2018v0.1.9.5
150.640.180.600.340.981.09374.3067.922,406.90MNN (full/unscaled)2018v0.1.9.5
160.630.000.390.371.361.049.0018.67560.10Scanorama gene output (hvg/scaled)2019v1.7
170.630.020.660.340.911.237.6012.48929.40Scanorama (hvg/unscaled)2019v1.7
180.620.880.420.300.580.922.3022.92467.20Harmony (hvg/unscaled)2019v0.1.7
190.620.000.620.360.921.1918.0014.631,379.50MNN (hvg/unscaled)2018v0.1.9.5
200.610.860.380.360.460.993.405.7083.00FastMNN embed (hvg/unscaled)2019v1.12.3
210.610.000.390.231.490.9313.8013.4392.70FastMNN embed (full/scaled)2019v1.12.3
220.600.890.530.270.410.9117.607.98600.60Combat (full/unscaled)2007v1.9.1
230.600.000.350.401.041.217.804.55978.70Scanorama gene output (hvg/unscaled)2019v1.7
240.57NaN0.720.240.741.1520.109.13853.50Combat (full/scaled)2007v1.9.1
250.570.090.390.311.430.6141.4022.701,502.50Scanorama gene output (full/scaled)2019v1.7
260.560.040.610.300.831.0219.3023.121,327.60Scanorama gene output (full/unscaled)2019v1.7
270.560.000.590.310.960.949.006.97836.40Harmony (full/scaled)2019v0.1.7
280.550.000.630.341.170.61106.0017.381,283.70MNN (hvg/scaled)2018v0.1.9.5
290.48NaN0.450.310.730.925.905.87501.90Combat (hvg/scaled)2007v1.9.1
300.480.000.620.290.560.933.0027.57491.50Harmony (hvg/scaled)2019v0.1.7
310.470.000.450.290.411.194.807.92250.40Combat (hvg/unscaled)2007v1.9.1
320.410.000.380.360.460.854.905.6597.40FastMNN embed (hvg/scaled)2019v1.12.3