Batch integration embed thumbnail
Batch integration embed

Removing batch effects while preserving biological variation (embedding output)

See Batch integration embed results
Batch integration feature thumbnail
Batch integration feature

Removing batch effects while preserving biological variation (feature output)

See Batch integration feature results
Batch integration graph thumbnail
Batch integration graph

Removing batch effects while preserving biological variation (graph output)

See Batch integration graph results
Cell-Cell Communication Inference (Ligand-Target) thumbnail
Cell-Cell Communication Inference (Ligand-Target)

Detect interactions between ligands and target cell types

See Cell-Cell Communication Inference (Ligand-Target) results
Cell-Cell Communication Inference (Source-Target) thumbnail
Cell-Cell Communication Inference (Source-Target)

Detect interactions between source and target cell types

See Cell-Cell Communication Inference (Source-Target) results
Denoising thumbnail
Denoising

Removing noise in sparse single-cell RNA-sequencing count data

See Denoising results
Dimensionality reduction for visualisation thumbnail
Dimensionality reduction for visualisation

Reduction of high-dimensional datasets to 2D for visualization & interpretation

See Dimensionality reduction for visualisation results
Label Projection thumbnail
Label Projection

Automated cell type annotation from rich, labeled reference data

See Label Projection results
Multimodal Data Integration thumbnail
Multimodal Data Integration

Alignment of cellular profiles from two different modalities

See Multimodal Data Integration results
Spatial Decomposition thumbnail
Spatial Decomposition

Calling cell-type compositions for spot-based spatial transcriptomics data

See Spatial Decomposition results